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Claims  |
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What is claimed is:
1. A method for detecting an analyte of interest in a liquid sample which
comprises: (a) contacting the sample with a first reagent capable of
forming a complex with the analyte of interest so as to form a first
reagent:analyte complex;
(b) contacting the first reagent:analyte complex with an oxidase-labelled
reagent capable of forming a complex with the first reagent:analyte
complex so as to form a first reagent:analyte:oxidase-labelled reagent
complex;
(c) treating the first reagent:analyte: oxidase-labelled reagent complex
with a nitrogen-substituted, cyclic compound and an oxidizing agent so as
to enzymatically oxidize the nitrogen-substituted, cyclic compound to
produce an amine-substituted, ortho-fused pyrazine wherein neither
nitrogen of the pyrazine ring is fused or substituted; and
(d) exciting the amine-substituted, ortho-fused pyrazine so as to cause it
to fluoresce and thus to emit radiation;
(e) detecting the radiation so emitted, thereby by detecting the analyte of
interest.
2. A method according to claim 1, wherein the first reagent: analyte:
oxidase-labelled reagent complex is treated with at least two structurally
different nitrogen-substituted, cyclic compounds.
3. A method according to claim 1, wherein the first
reagent:analyte:oxidase-labelled reagent complex is treated under
conditions wherein the pH is within the range from about 3.5 up to about
6.5.
4. A method according to claim 3, wherein the first reagent:
analyte:oxidase-labelled reagent complex is treated under conditions
wherein the pH is within the range from about 4.5 up to about 5.0.
5. A method according to claim 1, wherein the analyte of interest is an
antigen and the first reagent and the oxidase-labelled reagent are
antibodies, ligands or haptens.
6. A method according to claim 1, wherein the analyte of interest is an
antibody and the first reagent and the oxidase-labelled reagent are
antigens, haptens, ligands, antibodies, or anti-isotopic antibodies.
7. A method for detecting an analyte of interest present in a liquid sample
which comprises:
(a) contacting the sample with an oxidase-labelled reagent capable of
competing with the analyte of interest for binding sites on a
complementary material not normally present in the sample, and with the
complementary material, the contact being effected under appropriate
conditions such that the analyte of interest and the oxidase-labelled
reagent competitively bind to the complementary material so as to form
analyte of interest: complementary material complexes and oxidase-labelled
reagent: complementary material complexes;
(b) separating the analyte of interest: complementary material complexes
and the oxidase-labelled reagent: complementary material complexes from
unbound analyte of interest and unbound oxidase-labelled reagent so as to
obtain mixture of analyte of interest: complementary material complexes
and oxidase-labelled reagent: complementary material complexes:
(c) treating the mixture with a nitrogen-substituted, cyclic compound and
an oxidizing agent so as to enzymatically oxidize the
nitrogen-substituted, cyclic compound to produce an amine-substituted,
ortho-fused pyrazine wherein neither nitrogen of the pyrazine ring is
fused or substituted;
(d) exciting the amine-substituted, ortho-fused pyrazine so as to cause it
to fluoresce and thus to emit radiation; and
(e) detecting the radiation so emitted, thereby by detecting the analyte of
interest.
8. A method according to claim 7, wherein the analyte of interest is an
antigen, the oxidase-labelled reagent is the antigen or an analog of the
antigen conjugated to an oxidase, and the complementary material is an
antibody, ligand, or hapten.
9. A method according to claim 7, wherein the analyte of interest is an
antibody, the oxidase-labelled reagent is the same or a different antibody
conjugated to an oxidase, and the complementary material is an antibody,
hapten, ligand, antibody, or anti-idiotypic antibody.
10. A method according to claim 7, wherein the mixture is treated with at
least two structurally different nitrogen-substituted, cyclic compounds.
11. A method for detecting a single-stranded nucleic acid sequence of
interest in a liquid sample which comprises:
(a) contacting the liquid sample with an oxidase-labelled, single-stranded
nucleic acid sequence complementary to the nucleic acid sequence of
interest under hybridizing conditions so as to form an oxidase-labelled,
double-stranded nucleic acid sequence;
(b) treating the oxidase-labelled, double-stranded nucleic acid sequence
with a nitrogen-substituted, cyclic compound and an oxidizing agent so as
to enzymatically oxidize the nitrogen-substituted, cyclic compound to
produce an amine-substituted, ortho-fused pyrazine wherein neither
nitrogen of the pyrzaine ring is fused or substituted;
(d) exciting the amine-substituted, ortho-fused pyrazine so as to cause it
to fluoresce and thus to emit radiation; and
(e) detecting the radiation so emitted, thereby by detecting the analyte of
interest.
12. A method according to claim 11, wherein the oxidase-labelled,
double-stranded nucleic acid sequence is treated with at least two
structurally different nitrogen-substituted, cyclic compounds.
13. A method for detecting oxidase activity in a liquid sample which
comprises:
(a) treating the liquid sample with a nitrogen-substituted, cyclic compound
and an oxidizing agent under conditions such that an oxidase present in
the liquid sample enzymatically oxidizes the nitrogen-substituted, cyclic
compound to produce an amine-substituted, ortho-fused pyrazine wherein
neither nitrogen of the pyrzaine ring is fused or substituted;
(d) exciting the amine-substituted, ortho-fused pyrazine so as to cause it
to fluoresce and thus to emit radiation; and
(e) detecting the radiation so emitted, thereby by detecting oxidase
activity in the liquid sample.
14. A method for detecting an oxidizing agent in a liquid sample which
comprises:
(a) treating the liquid sample with a nitrogen-substituted, cyclic compound
and an oxidase under conditions such that the nitrogen-substituted, cyclic
compound is enzymatically oxidized to produce an amine-substituted,
ortho-fused pyrazine wherein neither nitrogen of the pyrzaine ring is
fused or substituted;
(d) exciting the amine-substituted, ortho-fused pyrazine so as to cause it
to fluoresce and thus to emit radiation; and
(e) detecting the radiation so emitted, thereby by detecting the oxidizing
agent.
15. A method according to claims 13 or 14, wherein the liquid sample is
treated with at least two structurally different nitrogen-substituted,
cyclic compounds.
16. A method according to claims 1, 7, 11, 13 or 14, wherein the
amine-substituted, ortho-fused pyrzaine is an aminophenazine.
17. A method according to claims 1, 7, 11, 13 or 14, wherein the
nitrogen-substituted cyclic compound is an amine-substituted or
imine-substituted cyclic compound.
18. A method according to claims 1, 7, 11, 13 or 14, wherein the
nitrogen-substituted cyclic compound is an amine-substituted aromatic
compound.
19. A method according to claim 18, wherein the amine-substituted aromatic
compound is an ortho-substituted, diamino-aromatic compound.
20. A method according to claim 19, wherein the ortho-substituted,
diamino-aromatic compound is 1,2-diaminobenzene, 3,4-diaminobenzoic acid,
or 2,3-diaminopyridine.
21. A method according to claims 1, 7, 11, 13 or 14, wherein the detection
is performed qualitatively.
22. A method according to claims 1, 7, 11, 13 or 14, wherein the detection
is performed quantitatively.
23. A method according to claims 1, 7, 11, 13 or 14, wherein prior to
exciting the amine-substituted, ortho-fused pyrazine so as to cause it to
fluoresce, the pH is adjusted to greater than about 6.5.
24. A method according to claims 1, 7, 11, 13 or 14, wherein prior to
exciting the amine-substituted, ortho-fused pyrazine so as to cause it to
fluoresce, the pH is adjusted to greater than about 10.
25. A method according to claims 1, 7, 11, 13 or 14, wherein the oxidase is
a peroxidase or catalase.
26. A method according to claim 25, wherein the peroxidase is horseradish
peroxidase.
27. A method according to claims 1, 7, 11, 13 or 14, wherein the oxidizing
agent is a peroxide.
28. A method according to claim 27, wherein the peroxide is hydrogen
peroxide.
29. A method according to claim 27, wherein the peroxide is urea peroxide. |
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Claims  |
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Description  |
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BACKGROUND OF THE INVENTION
The present invention concerns fluorescent substrates and fluorophores
produced therefrom useful in fluorescent detection methods. Measurement of
the fluorescence produced by these fluorophores is indicative of the
presence and the amount of fluorophore in a sample.
Immunoassays employing the unique specificity of antibodies for their
counterpart antigens at the molecular binding level have been demonstrated
to be extremely valuable methods of analysis to determine the presence or
absence of one or more components. The specificity of an antibody for its
coupling partner, i.e., counterpart antigen, permits the detection of very
small concentrations of specific antigens or antibodies in the presence of
considerable other biomaterials (proteins, lipids, sugars, etc.) as
usually found in body fluids or other biological samples.
In the past several decades, one of the more useful approaches employed to
take advantage of this specificity utilizes the labeling or tagging of
either the antibody or the antigen, depending upon the analyte sought in
the sample. It is the label or tag which is detected in making a
determination with respect to the analyte sought. Exemplary of labels that
may be employed are radioactive labels which can be detected in
scintillating or gamma counters, fluorochromes which can be detected in
fluorometers, luminescent labels which spontaneously emit light and can be
detected by light detectors, and enzymes labels which in themselves are
not detectable but which, when allowed to interreact with other
"substrate" molecules, produce changes in the substrate which can be
detected. The advantage of the enzyme label is the fact that a single
enzyme molecule can alter many tens of thousands of substrate molecules
per minute, and this translates into enhanced sensitivity.
The use of enzyme labels in an assay system has been referred to as an
enzyme-labelled immuno-sorbant assay, which for brevity is sometimes
referred to as an ELISA technique. Such assays are the subject of a number
of U.S. patents, including the following: U.S. Pat Nos. 3,654,090;
3,791,932; 3,839,153; 3,850,752; 3,879,262; 4,016,043; RE 29,169; U.S.
Pat. Nos. 4,152,411; 4,169,012; 4,228,240; 4,292,403; 4,331,761;
4,343,896; RE 31,006.
In a typical ELISA technique, a binding partner for the substance to be
determined is reduced to an insolubilized form, as by adsorption of the
binding partner on the wall of a plastic tube or other adsorbant, i.e.,
reactive surface. The substance to be determined is reacted with the
insolubilized binding partner and the liquid phase of the reaction is
subsequently separated. The solid phase is thereafter reacted with a
determined amount of coupling partner of the substance to be determined,
which coupling partner has been tagged with an enzyme. A coupled product
results, and to this product there is added a liquid substrate reactable
with the enzyme labels or tags of the coupling partner. The presence of
resulting products are usually determined by viewing the color of the
liquid phase in the final reaction mixture. Additionally, a chemical
stopper is often added to the reaction mixture to inhibit further
enzymatic reaction. In a chromogenic detection system, this chemical
stopper often produces a change in the resulting product which causes a
resultant change in color for easier visual read out. Many regard the
chemical stopper, often acid or alkali, not so much as a stopper but
rather as a color developer or enhancer.
To obtain greater sensitivity in an enzyme immunoassay, an end product
measurable by fluorescent techniques would be preferred (see K. H. Milby
in "Enzyme-Mediated Immunoassay", T. T. Ngo and H. M. Lenhoff, eds. Plenum
Press, New York, pp. 325-341, 1985).
Fluorescence is a process by which a molecule that is excited by light of a
given wavelength emits light at a longer wavelength. The intensity of
light emission from a collection of fluorescent molecules depends on:
(1) the intensity of the excitation light source;
(2) the amount of light absorbed, which according to Beer's Law, depends
directly on the concentration of the fluorescent molecules present; and
(3) the efficiency with which the fluorescent molecules convert absorbed
light into emitted light (the fluorescence quantum yield of the molecule).
If a constant level of excitation light intensity is maintained, emitted
light intensity is directly proportional to the number of fluorescent
molecules present.
Fluorescence in general is considered to be up to 100 times more sensitive
than spectrophotometric techniques or other color-change detection
techniques. The use of .beta.-D-galactosidase enzyme and its fluorogenic
substrate 4-methylumbelliferyl .beta.-D-galactoside has been cited in the
literature as an example of this type of assay (Ishikawa E., Imagawa M., &
Hashids S., "Ultrasensitive Enzyme Immunoassay Using Fluorogenic,
Lumenogenic, Radioactive and Related Substrates and Factors to Limit
Sensitivity", J. Biochem 73, 1319-1321, 1973).
By using fluorescent molecules as labels in immunoassays, either directly
attached to an antibody or antigen (called fluorescence immunoassay, or
FIA) or as a fluorogenic substrate to detect an enzyme attached to
antibody or antigen (called enzyme-linked fluorescence immunoassay, EFIA,
or F-ELISA, fluorescence enzyme-linked immunosorbent assay), reagent
systems and instruments have been developed which allow quantitative
detection of analyte levels with high efficiency and sensitivity.
FIA has the advantages of simplicity of procedure, immediate end point
measurement, and excellent reproducibility (precision) of results. EFIA
offers greater sensitivity than FIA, since the catalytic activity of each
enzyme label can produce up to 10,000 or more fluorophores by proper
choice of fluorophore precursor molecule, i.e., fluorogenic substrate.
Among the fluorescent molecules most frequently used in immunochemistry
are fluorescein, the rhodamines, certain coumarin (umbelliferone)
derivatives, and most recently, the phycobiliproteins.
Fluorescein is currently the label of choice in FIA. Its physical
properties illustrate the factors important in a fluorophore label.
Fluorescein is a very efficient emitter of light, with a fluorescence
quantum yield of 0.3 to 0.95 (vs. the maximum possible of 1.0) when
conjugated (attached) to an antibody or antigen. It is also an efficient
absorber of light, with a molar extinction coefficient [related to the
probability of absorbing a photon that strikes the fluorescein] of 70,000.
Fluorescein is stable and undergoes little degradation (photobleacing or
photolability) when exposed to light. Techniques for labelling antibodies
or protein antigens with fluorescein are relatively simple, but are not
easy to control. Fluorescein's fluorescence efficiency is affected very
little by temperature, but only the dianion form of the molecule, which
exists above pH 8, emits strongly, i.e., fluorescence efficiency varies
considerably with pH except at pH 8 or above.
On the negative side, fluorescein emits at 525 nm, with most efficient
excitation at 490 nm. Its fluorescence signal is thus subject to the
following types of interference which limit its effective sensitivity: (1)
overlap by endogeneous fluorescence, i.e. light emitted by sustenances
such as bilirubin and hemoglobin, which are normally found in serum
samples; (2) quenching, e.g., by bilirubin; and (3) inner filter effects,
i.e. preferential absorption of incident light by other molecules such as
hemoglobin. Its small Stoke's shift (30 nm) also leads to significant
background scattering, which must be eliminated by using complex,
dedicated (and thus expensive) filter systems and/or by sacrificing
certain efficiencies in instrument design, e.g., off-peak excitation or
emission detection. Fluorescein also self-quenches (inhibits its own
fluorescence) if molecules are brought into close proximity, so multiple
labeling even of large molecules like antibodies is of limited use, even
though fluorescein is a small molecule.
Other fluorophores also have certain advantages and drawbacks. The
rhodamines fluoresce at long wavelengths, but have poor Stoke's shifts,
relatively low fluorescence quantum yields, and are extremely sensitive to
pH and other environmental effects. The coumarins have relatively large
Stoke's shifts and high extinction coefficients but low quantum yields,
are pH sensitive, and their emission is above 500 nm, i.e., subject to
endogenous sample interference.
The biliproteins have very high extinction coefficients, long wavelength
emission, and in the case of R-phycoerythrin, good Stoke's shifts. They
also display high quantum yields, and their emission is relatively
insensitive to environment within the pH range of 5.5 to 9. These
molecules are large proteins which must be isolated, e.g., from red algae.
One such biliprotein, R-phycoerythrin, can provide sensitivity 10-20 times
greater than that afforded by fluorescein in FIA systems. Nevertheless the
large size and high molecular weight of these molecules, particularly of
R-phycoerythrin, place significant limitations on applications of these
molecules in immunoassays because of effects on reaction kinetics; e.g.,
they can't be used to replace fluorescein in fluorescence polarization or
in hapten assays with competitive binding formats.
SUMMARY OF THE INVENTION
The present invention provides a method for detecting an analyte of
interest in a liquid sample. This method comprises contacting the sample
with a first reagent capable of forming a complex with the analyte of
interest so as to form a first reagent:analyte complex. The first
reagent:analyte complex is then contacted with an oxidase-labelled reagent
cable of forming a complex with the first reagent:analyte complex so as to
form a first reagent:analyte:oxidase-labelled reagent complex. The first
reagent:analyte: oxidase-labelled reagent complex is next treated with a
nitrogen-substituted, cyclic compound and an oxidizing agent so as to
enzymatically oxidize the nitrogen-substituted, cyclic compound to produce
an amine-substituted, ortho-fused pyrazine wherein neither nitrogen of the
pyrazine ring is fused or substituted. By exciting the amine-substituted,
ortho-fused pyrazine so as to cause it to fluoresce, and thus to emit
radiation, and detecting the radiation so emitted, the analyte of interest
is detected.
The present invention also provides a method for detecting an analyte of
interest present in a liquid sample. This method comprises contacting the
sample with an oxidase-labelled reagent capable of competing with the
analyte of interest for binding sites on a complementary material not
normally present in the sample, and with the complementary material, the
contact being effected under appropriate conditions such that the analyte
of interest and the oxidase-labelled reagent competitively bind to the
complementary material so as to form analyte of interest: complementary
material complexes and oxidase-labelled reagent:complementary material
complexes. The analyte of interest: complementary material complexes and
the oxidase-labelled reagent: complementary material complexes are
separated from unbound analyte of interest and unbound oxidase-labelled
regent so as to obtain a mixture of analyte of interest: complementary
material complexes and oxidase-labelled reagent: complementary material
complexes. This mixture is then treated with a nitrogen-substituted,
cyclic compound and an oxidizing agent so as to enzymatically oxidize the
nitrogen-substituted, cyclic compound to produce an amine-substituted,
ortho-fused pyrazine wherein neither nitrogen of the pyrazine ring is
fused or substituted. By exciting the amine-substituted, ortho-fused
pyrazine so as to cause it to fluoresce and thus to emit radiation, and
detecting the radiation so emitted, the analyte of interest is detected.
A method for detecting a single-stranded nucleic acid sequence of interest
in a liquid sample is also provided by the present invention. The method
comprises contacting the liquid sample with an oxidase-labelled,
single-stranded nucleic acid sequence complementary to the nucleic acid
sequence of interest under hybridizing conditions so as to form an
oxidase-labelled, double-stranded nucleic acid sequence. The
oxidase-labelled, double-stranded nucleic acid sequence is treated with a
nitrogen-substituted, cyclic compound and an oxidizing agent so as to
enzymatically oxidize the nitrogen-substituted, cyclic compound to produce
an amine-substituted, ortho-fused pyrazine wherein neither nitrogen of the
pyrazine ring is fused or substituted. The amine-substituted, ortho-fused
pyrazine is then excited so as to cause it to fluoresce and thus to emit
radiation, the radiation so emitted is detected, and the analyte of
interest is thereby detected.
The present invention also provides a method for detecting oxidase activity
in a liquid sample which comprises treating the liquid sample with a
nitrogen-substituted, cyclic compound and an oxidizing agent under
conditions such than an oxidase present in the liquid sample enzymatically
oxidizes the nitrogen-substituted, cyclic compound to produce an
amine-substituted, ortho-fused pyrazine wherein neither nitrogen of the
pyrazine ring is fused or substituted. The amine-substituted, ortho-fused
pyrazine is then excited so as to cause it to fluoresce and thus to emit
radiation; and the radiation so emitted is detected, thereby detecting
oxidase activity in the liquid sample.
Also provided by the present invention is a method for detecting an
oxidizing agent in a liquid sample. This method comprises treating the
liquid sample with a nitrogen-substituted, cyclic compound and an oxidase
under conditions such that the nitrogen-substituted, cyclic compound is
enzymatically oxidized to produce an amine-substituted, ortho-fused
pyrazine wherein neither nitrogen of the pyrazine ring is fused or
substituted. The amine-substituted, ortho-fused pyrazine is then excited
so as to cause it to fluoresce and thus to emit radiation, and the
radiation so emitted is detected, thereby detecting the oxidizing agent.
The present invention also provides compounds having the structure
X--[(Y).sub.n --Z].sub.m
wherein:
X represents one or more nucleotides which may be the same or different,
one or more amino acids which may be the same or different, an antigen, an
antibody, an analyte of interest or analog of an analyte of interest;
Y represents a linker arm attaching X to Z;
Z represents an amine-substituted, ortho-fused pyrazine wherein neither
pyrazine nitrogen is fused or substituted;
n represents an integer; and
m represents an integer greater than or equal to 1.
Such compounds are useful as fluorophore-labelled reagents in immunoassays,
nucleic acid hybridization assays, etc.
BRIEF DESCRIPTION OF THE FIGURE
FIG. 1 graphically sets forth the results obtained from the experiment
described in Example 3. The plot which appears on the right of FIG. 1
illustrates the strength of fluorescent emission of different wavelengths
using an excitation wavelength of 425 nm. The plot on the left of FIG. 1
is the excitation spectrum observed for an emission wavelength of 570 nm.
DETAILED DESCRIPTION OF THE INVENTION
The present invention provides a method for detecting an analyte of
interest in a liquid sample. This method comprises contacting the sample
with a first reagent capable of forming a complex with the analyte of
interest so as to form a first reagent:analyte complex. The first
reagent:analyte complex is then contacted with an oxidase-labelled reagent
capable of forming a complex with the first reagent:analyte complex so as
to form a first reagent: analyte: oxidase-labelled reagent complex. The
first reagent:analyte: oxidase-labelled reagent complex is next treated
with a nitrogen-substituted, cyclic compound and an oxidizing agent so as
to enzymatically oxidize the nitrogen-substituted, cyclic compound to
produce an amine-substituted, ortho-fused pyrazine wherein neither
nitrogen of the pyrazine ring is fused or substituted. Within the present
application, "cyclic compound" means an alicyclic or heterocyclic
compound. By exciting the amine-substituted, ortho-fused pyrazine so as to
cause it to fluoresce, and thus to emit radiation, and detecting the
radiation so emitted, the analyte of interest is detected.
In one embodiment of the invention, the first reagent: analyte:
oxidase-labelled reagent complex is treated with at least two structurally
different nitrogen-substituted, cyclic compounds. In another embodiment of
the invention, the first reagent:analyte:oxidase-labelled reagent complex
is treated with the nitrogen-substituted, cyclic compound and the
oxidizing agent under conditions wherein the pH is within the range from
about 3.5 up to about 6.5, preferably within the range from about 4.5 to
about 5.0
In still another embodiment of the invention the analyte of interest is an
antigen and the first reagent and the oxidase-labelled reagent are
antibodies, ligands, or haptens. In yet a further embodiment of the
invention, the analyte of interest is an antibody and the first reagent
and the oxidase-labelled reagent are antigens, haptens, ligands,
antibodies, or anti-idiotypic antibodies.
The present invention also provides a method for detecting an analyte of
interest present in a liquid sample. This method comprises contacting the
sample with an oxidase-labelled reagent capable of competing with the
analyte of interest for binding sites on a complementary material not
normally present in the sample, and with the complementary material, the
contact being effected under appropriate conditions such that the analyte
of interest and the oxidase-labelled reagent competitively bind to the
complementary material so as to form analyte of interest: complementary
material complexes and oxidase-labelled reagent:complementary material
complexes. The analyte of interest: complementary material complexes and
the oxidase-labelled reagent: complementary material complexes are
separated from unbound analyte of interest and unbound oxidase-labelled
reagent so as to obtain a mixture of analyte of interest: complementary
material complexes and oxidase-labelled reagent: complementary material
complexes. This mixture is then treated with a nitrogen-substituted,
cyclic compound and an oxidizing agent so as to enzymatically oxidize the
nitrogen-substituted, cyclic compound to produce an amine-substituted,
ortho-fused pyrzaine wherein neither nitrogen of the pyrazine ring is
fused or substituted. By exciting the amine-substituted, ortho-fused
pyrazine so as to cause it to fluoresce and thus to emit radiation, and
detecting the radiation so emitted, the analyte of interest is detected.
In one embodiment of the invention, the analyte of interest is an antigen,
the oxidase-labelled reagent is the antigen or an analog of the antigen
conjugated to an oxidase, and the complementary material is an antibody,
ligand, or hapten. In another embodiment of the invention the analyte of
interest is an antibody, the oxidase-labelled reagent is the same or a
different antibody conjugated to an oxidase, and the complementary
material is an antigen, hapten, ligand, antibody, or anti-idiotypic
antibody. In yet another embodiment of the invention, the mixture is
treated with at least two structurally different nitrogen-substituted,
cyclic compounds.
A method for detecting a single-stranded nucleic acid sequence of interest
in a liquid sample is also provided by the present invention. The method
comprises contacting the liquid sample with an oxidase-labelled,
single-stranded nucleic acid sequence complementary to the nucleic acid
sequence of interest under hybridizing conditions so as to form an
oxidase-labelled, double-stranded nucleic acid sequence. The
oxidase-labelled, double-stranded nucleic acid sequence is treated with a
nitrogen-substituted, cyclic compound and an oxidizing agent so as to
enzymatically oxidize the nitrogen-substituted, cyclic compound to produce
an amine-substituted ortho-fused pyrzaine wherein neither nitrogen of the
pyrazine ring is fused or substituted. The amine-substituted, ortho-fused
pyrazine is then excited so as to cause it to fluoresce and thus to emit
radiation, and the radiation so emitted is detected, thereby detecting the
analyte of interest.
In one embodiment of the invention, the oxidase-labelled, single-stranded
nucleic acid sequence is treated with at least two structurally different
nitrogen-substituted, cyclic compounds.
The present invention also provides a method for detecting oxidase activity
in a liquid sample which comprises treating the liquid sample with a
nitrogen-substituted, cyclic compound and an oxidizing agent under
conditions such that an oxidase present in the liquid sample enzymatically
oxidizes the nitrogen-substituted, cyclic compound to produce an
amine-substituted, ortho-fused pyrazine wherein neither nitrogen of the
pyrazine ring is fused or substituted. The amine-substituted, ortho-fused
pyrazine is then excited so as to cause it to fluoresce and thus to emit
radiation; and the radiation so emitted is detected, thereby detecting
oxidase activity in the liquid sample.
In one embodiment of the invention, the liquid sample is treated with at
least two structurally different nitrogen-substituted, cyclic compounds.
Also provided by the present invention is a method for detecting an
oxidizing agent in a liquid sample. This method comprises treating the
liquid sample with a nitrogen-substituted, cyclic compound and an oxidase
under conditions such that the nitrogen-substituted, cyclic compound is
enzymatically oxidized to produce an amine-substituted, ortho-fused
pyrzaine wherein neither nitrogen of the pyrazine ring is fused or
substituted. The amine-substituted, ortho-fused pyrzaine is then excited
so as to cause it to fluoresce and thus to emit radiation, and the
radiation so emitted is detected, thereby detecting the oxidizing agent.
In one embodiment of the invention, the liquid sample is treated with at
least two structurally different nitrogen-substituted, cyclic compounds.
The methods provided by the present invention may be practiced by oxidizing
the nitrogen-substituted, cyclic compound so as to form an
amine-substituted, ortho-fused pyrazine which comprises an aminophenazine.
Additionally, the methods provided by the present invention may be
practiced by enzymatically oxidizing a nitrogen-substituted cyclic
compound which comprises an amine-substituted or imine-substituted cyclic
compound. Moreover, the nitrogen-substituted cyclic, compound which is
oxidized may comprise an amine-substituted aromatic compound. In one
embodiment of the invention the amine-substituted, aromatic compound is an
ortho-substituted, diamino-aromatic compound. In another embodiment of the
invention the ortho-substituted, diamino-aromatic compound is
1,2-diaminobenzene (also known as o-phenylenediamine and referred to
herein as OPD), 3,4-diaminobenzoic acid, or 2,3-diaminopyridine.
The methods provided by the present invention may be performed
qualitatively or quantitatively. Moreover, prior to exciting the
amine-substituted, ortho-fused pyrazine so as to cause it to fluoresce,
the pH may be adjusted to greater than about 6.5. In one embodiment of the
invention, the pH is adjusted to greater than about 10 prior to exciting
the amine-substituted, ortho-fused pyrazine so as to cause it to
fluoresce.
The oxidase utilized in the methods provided by the present invention may
be a peroxidase or catalase. In one embodiment of the invention, the
peroxidase may be horseradish peroxidase. Additionally, the oxidizing
agent may be a peroxide, e.g. hydrogen peroxide or urea peroxide.
The present invention also provides a compound having the structure
X--[(Y).sub.n --Z].sub.m
wherein:
X represents one or more nucleotides which may be the same or different,
one or more amino acids which may be the same or different, an antigen, an
antibody, an analyte of interest or analog of an analyte of interest;
Y represents a linker arm attaching X to Z;
Z represents an amine-substituted, ortho-fused pyrazine wherein neither
pyrazine nitrogen is fused or substituted;
n represents an integer; and
m represents an integer greater than or equal to 1.
This compound is useful as a fluorophore-labelled reagent in immunoassays,
nucleic acid hybridization assays, etc.
In one embodiment of the invention, Z represents 2,3-diaminophenazine,
2,3-diamino-1,8-diazaphenazine, 6,7-diamino-1,5-diazaphenazine, or
2,3-diaminophenazine-6-carboxylic acid.
The methods and compounds provided by the present invention are based upon
the fluorescent detection of a fluorophore which is produced by the
enzymatic oxidation of a fluorophore precursor substrate. These novel
methods and compounds will be better understood by reference to the
following examples which are provided for purposes of illustration and are
not to be construed as in any way limiting the scope of the present
invention, which is defined by the claims appended hereto.
EXAMPLES
EXAMPLE 1
Serial dilutions were prepared of various substances, and samples of these
serial dilutions were tested for fluorescence activity in a fluorimeter.
The excitation wavelength bandpass in the fluorimeter was 450.+-.20 mn.
The emission wavelength bandpass in the fluorimeter was 550.+-.20 nm.
Readings were obtained in fluorescent signal units. The following table
sets forth the reading results obtained, with the specific substance
analyzed being listed under the column labelled "Substance" and with the
different dilutions of the samples being indicated at the heads of the
columns set forth to the right of the "Substance" column. The fluorescent
signal unit reading indicated for substance #7 was in excess of 8192, 8192
being the maximum fluorescent signal unit reading available with the
fluorimeter.
TABLE I
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Dilution
Substance 1:10 1:100 1:1000
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1. 1,2-diaminobenzene
727 -- 528
(3.2 mM in phosphate
buffered saline
solution pH 7)
2. hydrogen peroxide
661 700 756
(0.01% aqueous
solution)
3. horseradish 502 501 455
peroxidase-labelled
avidin (1:1000 in
phosphate buffered
saline solution)
4. 1,2-diaminobenzene
570 537 498
with hydrogen perox-
ide (3.2 mM in
phosphate buffered
saline solution pH 7
with 0.1% H.sub.2 O.sub.2)
5. 50 microliters 1,2-
941 769 538
diaminobenzene (3.2
mM in phosphate buf-
fered saline solution
pH 7) plus 50 micro-
liters peroxidase-
labelled avidin (1:1000
in phosphate buffered
saline solution)
6. hydrogen peroxide
568 732 538
plus peroxidase-
labelled avidin
(1:1000 in phosphate
buffered saline
solution with 0.01%
H.sub.2 O.sub.2)
7. 50 microliters 1,2-
>8192 >8192 >8192
diaminobenzene with
hydrogen peroxide
(3.2 mM in phosphate
buffered saline
solution pH 7 with
0.01% H.sub.2 O.sub.2) plus 30
microliters peroxidase-
labelled avidin (1:1000
in phosphate buffered
saline solution)
8. Mixture of #7 plus
900 838 1200
100 microliters 3N
HCl stopper
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It will be seen from Table I that various ingredients employed in carrying
out the method of the invention by themselves or in various
subcombinations displayed only marginal fluorescence reactivity. On the
other hand, the reaction product produced by the action of
peroxidase-labelled avidin on the substrate 1,2-diaminobenzene in the
presence of a hydrogen peroxide oxidizer resulted in a fluorescence
reactivity exceeding the measurement capability of the fluorimeter even at
serial dilution of 1:1000.
EXAMPLE 2
To determine the structure of the fluorophore produced by oxidation of OPD
with HRP and hydrogen peroxide, a reaction mixture containing the
fluorophore was concentrated to give a crop of dark brown needles, which
were then isolated from the concentrated solution by filtration. The
resulting dark brown needles were dissolved in butyl alcohol, applied to a
KBr plate and allowed to dry. An IR spectrum of the sample was recorded
using an IBM FTIR spectrometer.
The recorded spectral data indicated the presence of unsubstituted amino
groups, as well as an aromatic heterocyclic compound which contains
nitrogen. This data indicated that the reaction mixture contained
2,3-diaminophenazine (DAP).
Authentic 2,3-diaminophenazine and 2,2'-diaminoazobenzene were chemically
synthesized by standard literature methods (see Gupta and Srivastava,
Indian J. Chem. 9:1303-1304, 1971 and Omote, et al., Chemistry and
Industry, p. 996, 1971, respectively).
Product formation from the enzymatic oxidation of OPD using 0.1 M sodium
citrate, pH 5, 0.005 M hydrogen peroxide, 100 ng/ml HRP and 0.015 M OPD
was monitored by thin layer chromotography on Kieselgel.RTM. 60F.sub.254
silica gel plates (E. M. Scientific, N.J.) using the solvent system
benzene:ethanol:acentone:0.25% ammonium hydroxide (100:30:5:2).
Additionally, authentic DAP, 2,2'-diaminoazobenzene and the starting
material OPD were run on the plates. Only one product was observed from
the enzymatically oxidized reaction mixture of OPD. This product had an
R.sub.f value identical to that of authentic DAP and fluoresced strongly
under a black light.
The reaction mixture described above was diluted 1/50 in 0.1 M sodium
citrate, pH 5, and its emission spectrum was obtained and compared with
that of authentic DAP (1.3.times.10.sup.-5 M) in 0.1 M sodium citrate, pH
5. Using an excitation wavelength of 440 nm on a McPherson Model FL750
spectrofluorimeter, the maximum wavelength of emission for authentic DAP
was 565 nm compared with 562 nm for the OPD reaction mixture.
These data indicate that the product of enzymatic oxidation of OPD is DAP
and, further, that the DAP product is responsible for the observed
fluorescence.
EXAMPLE 3
A reacted mixture of 1,2-diaminobenzene, hydrogen peroxide, and
peroxidase-labelled avidin (substance #7 in Table I) was analyzed in an
Aminco-Bowman scanning spectrofluorimeter to determine fluorescence
reactivity in response to a given excitation wavelength, and to determine
the excitation spectrum for a fluorescent emission of a given wavelength.
As may be seen with reference to FIG. 1, peak emission was observed at the
wavelength 565 nm with an optimum excitation wavelength of 415 nm. A
Stoke's shift of 150 nm in the sample analyzed was demonstrated.
In Table II below, the Stoke's shifts experienced with some of the more
commonly known fluorophores is set forth and compared with the Stoke's
shift demonstrated with diaminophenazine.
TABLE II
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Stoke's
Fluorophore
Excitation (nm)
Emission (nm)
Shift (nm)
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Fluorescein
495 525 30
Tetramethyl-
550 585 35
rhodamine
4-methyl 375 450 75
umbelliferone
Fluorescamine
394 475 81
Lucifer 430 540 110
yellow VS
R-phycoerythrin
495 575 80
Diaminophenazine
415 565 150
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EXAMPLE 4
Serial dilutions (in phosphate buffered saline solution) of anti-feline IgG
antibody labelled with horseradish peroxidase were reacted with
1,2-diaminobenzene and hydrogen peroxide (3.2 mM with 0.01% H.sub.2
O.sub.2) in a series of glass test tubes. After a five minutes reaction,
20 microliters of each tube'2 contents were transferred to wells in a
plastic tray. The contents of these wells were then read in a fluorimeter
for fluorescence quantitation. Table III below sets forth the respective
dilutions of the antibody and the fluorimeter reading obtained.
TABLE III
______________________________________
Visual Subjective
Dilution of Fluorescence Under
Anti-Feline Fluorimeter
Black Lamp (Wave-
IgG Antibody Reading length of 365 nm)
______________________________________
1. 1:800 8192+ 4+
2. 1:3200 5195 2+
3. 1:12800 4400 2+
4. 1:51000 3705 2+
5. 1:204000 2743 2+
6. 1:816000 1525 0
7. Buffer 611 0
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Also indicated in Table III is the visual subjective fluorescence observed
under a black lamp, with grading being done on a zero to four basis, zero
being no observed fluorescence and four being indicative of clearly
observed and distinct fluorescence of high intensity.
EXAMPLE 5
Three-fold serial dilutions were prepared from D.immitis (Heartworm)
antigen (2 mg per ml) beginning with a 1:10 dilution in 0.01 M
carbonate-bicarbonate buffer, pH 9. Five microliters of each antigen
dilution were applied as spaced droplet deposits along the surface of a
nitrocellulose strip. The strips were then incubated at 37.degree. C. for
thirty minutes and washed with phosphate buffered saline solution pH 7.0
containing 0.3% ovalbumin and 0.05% Tween (detergent).
Dilutions were prepared of dog anti-D.immitis IgG (1:50, 1:250, 1:1250, and
1:6250) in the phosphate buffered saline solution described. Each antibody
dilution was used in the soaking of a strip containing each antigen
dilution. The strips were then incubated for one hour at room temperature.
Biotin-labelled goat anti-dog antibody IgG diluted 1:100 in the
above-described phosphate buffered saline solution was then applied to the
deposits on the various strips and the strips incubated for one hour at
room temperature. The strips were then washed for fifteen minutes with
phosphate buffered saline solution.
The assay was then developed by overlaying the deposits with horseradish
peroxidase-labelled avidin diluted 1:3000 in phosphate buffered saline
solution and the strips incubated for one hour. The strips were then
washed with phosphate buffered saline solution.
Each of the deposits was then punched out of the nitrocellulose strips
using a paper punch, and the punched deposits placed in respective wells
of a carrier such as a Track XI.RTM. microtiter strip (Microbiological
Associates, Inc., Bethesda, MD) described in U.S. Pat. No. 4,468,371 and
DES 279,817. Twenty microliter volumes of 1,2-diaminobenzene and hydrogen
peroxide solution (3.2 mM with 0.01% H.sub.2 O.sub.2) were placed in the
wells and the reaction allowed to proceed for five minutes. The contents
of the various wells were then washed with water.
The discs of cellulose then analyzed in a fluorimeter utilizing an
excitation wavelength of 450.+-.20 nm and an emission wavelength bandpass
of 550.+-.20 nm. The discs were also usually analyzed to determine
subjectively fluorescence under a black light (360 nm), and to determine
fluorescence with a fluorescence microscope with blue excitation and green
filter in the eye piece. Table IV sets forth the fluorimeter readings
obtained in signal units for the various deposits, and the subjective
fluorescence noted.
TABLE IV
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Black Light
Microscope-
Fluorimeter Subjective Subjective
Well Reading Fluorescence
Fluorescence
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1 5301 4+ 4+
2 2718 - .+-.
3 4623 4+ 5+
4 2429 1+ .+-.
5 2786 - .+-.
6 5718 3+ 4+
7 6026 2+ 3+
8 5862 3+ 2+
9 2508 - .+-.
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EXAMPLE 6
Clear polypropylene capillary tubes were precoated with a 5% polycarbonate
polymer (Lexan) in methylene dichloride solvent. After evaporation of the
solvent, a uniformly thin polymeric transparent film of the polycarbonate
was left as a residual on the inner surfaces of the tubes.
A dilution of unlabeled antibody directed against herpes simplex virus
(diluted in 0.01 M carbonate-bicarbonate buffer pH 9) was then adsorbed on
the coated inner surfaces of the capillary tubes with insolubilizing of
the antibody.
After adsorption of the capture antibody and washing with phosphate
buffered saline solution pH 7, serial dilutions of herpes virus antigen
extracted from tissue culture and suspended in phosphate buffered saline
solution were drawn up into the interior of the tubes and the tubes and
their contents incubated for thirty minutes. The tubes were then emptied
and flushed with phosphate buffered saline solution.
A dilution of a second antibody to | | |